Colletotrichum属推奨菌株
今世紀に入りColletotrichum属菌の分類に分子系統解析が取り入れられ、特に近年DNA塩基配列に基づく再分類の論文が立て続けに発表されている。分子系統解析の結果、わずかな形態に基づいて定義されてきた単一種が実は複数種の集合体（種複合体 = species complex）であることが明らかになり、その構成種が次々に分割されつつある。そこで、ジーンバンク所蔵菌株を各菌群の再分類で用いられているDNAバーコード領域・遺伝子塩基配列（リボソームDNA ITS領域、β-tubulin-2、Histone H3など）に基づき再同定し、培養性状・微小形態と合わせて各菌種に典型的な優良菌株を選定した。現在も盛んにColletotrichum属菌の再分類が進められているため、その最新情報を取り入れながら順次選定種を増やしていく予定である。
- 文献 佐藤豊三・森脇丈治 (2013). 広義Colletotrichum acutatumの種分割と炭疽病の病原再同定. 植物防疫 67(2): 113-120. [jppa.or.jp]
- 文献 佐藤豊三・森脇丈治 (2013). Colletotrichum acutatum系統群A2およびA4の再分類と同系統群の国内産菌株の再同定. 植物防疫 67(7): 367-372. [jppa.or.jp]
| MAFF番号 | 学名*1 | 遺伝子領域*2 | 配布 |
|---|---|---|---|
| 305972 | Colletotrichum boninense | Actin CHS-1 EF1-α GPDH H3 ITS β-tubulin | 申込 |
| 306162 | Colletotrichum boninense | Actin CHS-1 EF1-α GPDH H3 ITS β-tubulin | 申込 |
| 238656 | Colletotrichum camelliae-japonicae (CBSC) | Actin CAL CHS-1 EF1-α GPDH H3 ITS β-tubulin | 申込 |
| 239355 | Colletotrichum carthami (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 239356 | Colletotrichum carthami (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 239359 | Colletotrichum carthami (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 239362 | Colletotrichum carthami (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 239370 | Colletotrichum carthami (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 239373 | Colletotrichum carthami (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 305429 | Colletotrichum cereale (CMSC) | HMG ITS SOD2 | 申込 |
| 510634 | Colletotrichum cereale (CMSC) | HMG ITS SOD2 | 申込 |
| 305748 | Colletotrichum chlorophyti | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 237304 | Colletotrichum circinans (CDSC) | Actin CHS-1 GPDH ITS β-tubulin | 申込 |
| 238028 | Colletotrichum circinans (CDSC) | Actin CHS-1 GPDH ITS | 申込 |
| 306100 | Colletotrichum cymbidiicola (CBSC) | Actin CHS-1 EF1-α GPDH H3 ITS β-tubulin | 申込 |
| 238564 | Colletotrichum destructivum (CVSC) | Actin EF1-α GPDH ITS β-tubulin | 申込 |
| 239947 | Colletotrichum destructivum (CVSC) | Actin EF1-α GPDH ITS β-tubulin | 申込 |
| 511471 | Colletotrichum echinochloae (CMSC) | HMG ITS SOD2 | 申込 |
| 511472 | Colletotrichum echinochloae (CMSC) | HMG ITS SOD2 | 申込 |
| 511473 | Colletotrichum echinochloae (CMSC) | HMG ITS SOD2 | 申込 |
| 511155 | Colletotrichum eleusines (CMSC) | HMG ITS SOD2 | 申込 |
| 305077 | Colletotrichum falcatum (CMSC) | HMG ITS SOD2 | 申込 |
| 238654 | Colletotrichum fioriniae (CASC) | ITS β-tubulin | 申込 |
| 241801 | Colletotrichum fioriniae (CASC) | ITS β-tubulin | 申込 |
| 242591 | Colletotrichum fioriniae (CASC) | ITS β-tubulin | 申込 |
| 306247 | Colletotrichum fioriniae (CASC) | ITS β-tubulin | 申込 |
| 306504 | Colletotrichum fioriniae (CASC) | ITS β-tubulin | 申込 |
| 306520 | Colletotrichum fioriniae (CASC) | ITS β-tubulin | 申込 |
| 306527 | Colletotrichum fioriniae (CASC) | ITS β-tubulin | 申込 |
| 238783 | Colletotrichum gigasporum | Actin CAL CHS-1 EF1-α GPDH GS ITS SOD2 β-tubulin | 申込 |
| 237219 | Colletotrichum gloeosporioides (CGSC) | Actin CAL CHS-1 EF1-α GPDH GS ITS β-tubulin | 申込 |
| 306534 | Colletotrichum gloeosporioides (CGSC) | Actin CAL CHS-1 EF1-α GPDH GS ITS SOD2 β-tubulin | 申込 |
| 240289 | Colletotrichum godetiae (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 241297 | Colletotrichum godetiae (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 306506 | Colletotrichum godetiae (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 511343 | Colletotrichum graminicola | HMG ITS SOD2 | 申込 |
| 305404 | Colletotrichum hanaui (CMSC) | HMG ITS SOD2 | 申込 |
| 511014 | Colletotrichum hanaui (CMSC) | HMG ITS SOD2 | 申込 |
| 238563 | Colletotrichum higginsianum (CVSC) | Actin EF1-α GPDH ITS β-tubulin | 申込 |
| 305635 | Colletotrichum higginsianum (CVSC) | Actin EF1-α GPDH ITS β-tubulin | 申込 |
| 243424 | Colletotrichum horii (CGSC) | Actin CAL CHS-1 GPDH ITS SOD2 β-tubulin | 申込 |
| 306429 | Colletotrichum horii (CGSC) | Actin CAL CHS-1 EF1-α GPDH ITS SOD2 β-tubulin | 申込 |
| 243051 | Colletotrichum hsienjenchang | Actin CHS-1 H3 ITS | 申込 |
| 237232 | Colletotrichum karsti (CBSC) | Actin CAL CHS-1 EF1-α GPDH H3 ITS β-tubulin | 申込 |
| 305998 | Colletotrichum karsti (CBSC) | Actin CAL CHS-1 EF1-α GPDH H3 ITS β-tubulin | 申込 |
| 306204 | Colletotrichum karsti (CBSC) | Actin CAL CHS-1 EF1-α GPDH H3 ITS β-tubulin | 申込 |
| 840070 | Colletotrichum karsti (CBSC) | Actin CAL CHS-1 EF1-α GPDH H3 ITS β-tubulin | 申込 |
| 240431 | Colletotrichum lineola (CDSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 712313 | Colletotrichum lineola (CDSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 238703 | Colletotrichum liriopes (CSSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 242679 | Colletotrichum liriopes (CSSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 241800 | Colletotrichum metake | Actin CAL CHS-1 GPDH GS ITS SOD2 β-tubulin | 申込 |
| 510857 | Colletotrichum miscanthi (CMSC) | HMG ITS SOD2 | 申込 |
| 239086 | Colletotrichum musae (CGSC) | Actin EF1-α GPDH ITS β-tubulin | 申込 |
| 305595 | Colletotrichum musae (CGSC) | Actin CAL CHS-1 EF1-α GPDH GS ITS SOD2 β-tubulin | 申込 |
| 305391 | Colletotrichum nicholsonii (CMSC) | HMG SOD2 | 申込 |
| 511115 | Colletotrichum nicholsonii (CMSC) | HMG SOD2 | 申込 |
| 241294 | Colletotrichum nymphaeae (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 242590 | Colletotrichum nymphaeae (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 306505 | Colletotrichum nymphaeae (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 306523 | Colletotrichum nymphaeae (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 712311 | Colletotrichum nymphaeae (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 306518 | Colletotrichum orbiculare | Actin EF1-α GPDH GS ITS β-tubulin | 申込 |
| 726522 | Colletotrichum orbiculare | Actin EF1-α GPDH GS ITS β-tubulin | 申込 |
| 305403 | Colletotrichum paspali (CMSC) | HMG ITS SOD2 | 申込 |
| 511000 | Colletotrichum paspali (CMSC) | HMG ITS SOD2 | 申込 |
| 239721 | Colletotrichum sansevieriae | Actin CAL CHS-1 EF1-α GPDH GS ITS SOD2 β-tubulin | 申込 |
| 242692 | Colletotrichum scovillei (CASC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 240106 | Colletotrichum shisoi | Actin EF1-α GPDH ITS β-tubulin | 申込 |
| 239736 | Colletotrichum sloanei (CASC) | Actin CAL CHS-1 GPDH GS H3 ITS β-tubulin | 申込 |
| 238702 | Colletotrichum spaethianum (CSSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 239500 | Colletotrichum spaethianum (CSSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 305360 | Colletotrichum sublineola (CMSC) | HMG ITS SOD2 | 申込 |
| 511474 | Colletotrichum sublineola (CMSC) | HMG ITS SOD2 | 申込 |
| 240195 | Colletotrichum tabacum (CVSC) | Actin EF1-α GPDH ITS β-tubulin | 申込 |
| 712333 | Colletotrichum tofieldiae (CSSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 237991 | Colletotrichum trichellum | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 410046 | Colletotrichum trichellum | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 305079 | Colletotrichum trifolii (COSC) | Actin EF1-α GPDH GS ITS β-tubulin | 申込 |
| 510896 | Colletotrichum trifolii (COSC) | Actin EF1-α GPDH GS ITS β-tubulin | 申込 |
| 239896 | Colletotrichum truncatum (CTSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 305754 | Colletotrichum truncatum (CTSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 306552 | Colletotrichum truncatum (CTSC) | Actin CHS-1 GPDH H3 ITS β-tubulin | 申込 |
| 238574 | Colletotrichum zoysiae | HMG ITS SOD2 | 申込 |
| 238575 | Colletotrichum zoysiae | HMG ITS SOD2 | 申込 |
- *1 所属種複合体 (species complex):
(CASC): C. acutatum, (CBSC): C. boninense, (CDSC): C. dematium, (CGSC): C. gloeosporioides, (CMSC): C. graminicola, (COSC): C. orbiculare, (CSSC): C. spaethanum, (CTSC): C. truncatum, (CVSC): C. destructivum - *2 プライマーは以下の通りです。
Actin: ATGTGCAAGGCCGGTTTCGC / TACGAGTCCTTCTGGCCCAT
CAL: GAATTCAAGGAGGCCTTCTC / CTTCTGCATCATGAGCTGGAC
CHS-1: TGGGGCAAGGATGCTTGGAAGAAG / TGGAAGAACCATCTGTGAGAGTTG
EF1-α: TGCGTCATCGGCCACGT / GGATGTACCAGTSATCATGTT
GPDH: GCCGTCAACGACCCCTTCATTGA / GGGTGGAGTCGTACTTGAGCATGT
GS: GCCGGT GGAGGAACCGTCG / GAACCGTCGAAGTTCCAC
H3: AGGTCCACTGGTGGCAAG / AGCTGGATGTCCTTGGACTG
HMG: ATTCTCTACCGCAAGGATC / CAGTTTGT'TATGGCGCTC
ITS: GGAAGTAAAAGTCGTAACAAGG / TCCTCCGCTTATTGATATGC
SOD2: GCCCACAGTACATATTGCCTAAGC / TCATCCCGGGAGCCAGAAAACCT
β-tubulin: AACATGCGTGAGATTGTAAGT / ACCCTCAGTGTAGTGACCCTTGGC
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