Marker information

Information Transfer Agreement (ITA)

It is understood that the supply of information is conditional upon:

  1. The information is used for research purposes within the projects I am conducting;
  2. The information will not be used in any way that directly leads to a patent;
  3. The information will not be passed to third parties by me or my research collaborators

If you agree with the Information Transfer Agreement, please send us your name, affiliation and E-mail address to download files indicated below.

  • the lists of SSR primers used for constructing azuki bean (Vigna angularis) and black gram (Vigna mungo) linkage map
  • the lists of SSR primers used for constructing mungbean (Vigna radiata), rice bean (Vigna umbellata) and yardlong bean (Vigna unguiculata) linkage map

Mungbean (Vigna radiata) SSR information

  • Isemura T., Kaga A., Tabata S., Somta P., Srinives P., Shimizu T., Jo U., Vaughan D.A., Tomooka N. (2012). Construction of a genetic linkage map and genetic analysis of domestication related traits in mungbean [Vigna radiata]. PLoS ONE 7(8): e41304. [10.1371/journal.pone.0041304]
Linkage map
Mungbean linkage map

Rice bean (Vigna umbellata) SSR information

  • Tian J., Isemura T., Kaga A., Vaughan D.A., Tomooka N. (2013). Genetic diversity of the rice bean [Vigna umbellata] genepool as assessed by SSR markers. Genome 56: 717-727. [10.1139/gen-2013-0118]
Linkage map
Rice bean linkage map

Yardlong bean (Vigna unguiculata) SSR information

  • Kongjaimun A., Kaga A., Tomooka N., Somta P., Shimizu T., Shu Y., Isemura T., Vaughan D.A., Srinives P. (2012). An SSR-based linkage map of yardlong bean [Vigna unguiculata (L.) Walp. subsp. unguiculata Sesquipedalis Group] and QTL analysis of pod length. Genome 55(2): 81-92. [10.1139/g11-078]
Linkage map
Yardlong linkage map

Azuki bean (Vigna angularis) SSR information (196 primers)

  • O.K. Han, A. Kaga, T. Isemura, X.W. Wang, N. Tomooka, D.A. Vaughan (2005). A genetic linkage map for azuki bean [Vigna angularis (Willd.) Ohwi & Ohashi]. Theoretical and Applied Genetics 111: 1278-1287. [10.1007/s00122-005-0046-8]
Linkage map
Azuki bean linkage map based on SSR markers (red), RFLP markers (blue) and AFLP markers (black)
  • The linkage map was constructed using 187 individuals of BC1F1 population {(V. nepalensis x V. angularis) x V. angularis}
  • Parental materials V. angularis (JP81481) and V. nepalensis (JP107881) are available upon request to NARO Genebank
  • Allele sizes were determined using ABI Prism 3100 Genetic Analyzer

Black gram (Vigna mungo) SSR information (61 primers)

  • B. Chaitieng, A. Kaga, N. Tomooka, T. Isemura, Y. Kuroda, D.A. Vaughan (2006). Development of a black gram [Vigna mungo (L.) Hepper] linkage map and its comparison with an azuki bean [Vigna angularis (Willd.) Ohwi and Ohashi] linkage map. Theoretical and Applied Genetics 113: 1261-1269. [10.1007/s00122-006-0380-5]
Linkage map
Black gram linkage map