Details of microorganism genetic resources

Details of MAFF 663003
MAFF No.663003
CategoryBacterium
Scientific nameRhizobium rhizogenes (Riker, Banfield, Wright, Keitt and Sagen 1930) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ti)
Taxonomic statusApproved strain
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Deposited asAgrobacterium tumefaciens (Smith and Townsend 1907) Conn 1942
IdentifierH. Sawada
SourcePrunus persica (L.) Batsch
Site on the sourceroot
LocationJAPAN (OKAYAMA)
Isolation dateDec 1987
IsolatorH. Sawada
DepositorH. Sawada
DesignationPch-Ag-2
MediumPotato infusion from 100.0g, Dipotassium phosphate 5.0g, Glucose 5.0g, Peptone 5.0g, NaCl 0.5g, Ferrous sulfate trace, Agar 15.0g pH 7.0-
Temperature28℃
HazardPathogenic (plant)
PropertyPathogenicity (Nectarine Crown gall)
Sequence16S atpD glnA recA
Reference
  • Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K. (2009). Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile. Plant Pathology Journal 8(1): 1-8. [10.3923/ppj.2009.1.8]
  • Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K. (2009). Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species. Microbiological Research 164(6): 604-612. [10.1016/j.micres.2007.08.003]
  • Kawaguchi, A., Sawada, H., Inoue, K. and Nasu, H. (2005). Multiplex PCR for the identification of Agrobacterium biovar 3 strains. Journal of General Plant Pathology 71(1): 54-59. [10.1007/s10327-004-0160-5]
  • Sawada, H. (1994). Studies on differentiation and taxonomy of the genus Agrobacterium. Bulletin of the Fruit Tree Research Station 5: 1-110. [agriknowledge.affrc.go.jp]
  • Sawada, H. (2006). Agrobacteria ─(1) Introduction of their profiles─. Microbial Resources and Systematics (Microbiology and Culture Collections) 22(2): 117-121. [jsmrs.jp]
  • Sawada, H. (2007). Agrobacteria ─(2) Present status of their systematics─. Microbial Resources and Systematics (Microbiology and Culture Collections) 23(1): 29-34. [jsmrs.jp]
  • Sawada, H. (2015). Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 81(4): 332-340. [10.3186/jjphytopath.81.332]
  • Sawada, H. and Ieki, H. (1992). Phenotypic characteristics of the genus Agrobacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 37-45. [10.3186/jjphytopath.58.37]
  • Sawada, H., Ieki, H. and Matsuda, I. (1995). PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains. Applied and Environmental Microbiology 61(2): 828-831. [aem.asm.org]
  • Sawada, H., Suzaki, K. and Kawaguchi, A. (2016). Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 82(2): 116-124. [10.3186/jjphytopath.82.116]
  • Sawada, H., Takikawa, Y. and Ieki, H. (1992). Fatty acid methyl ester profiles of the genus Agrobacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 46-51. [10.3186/jjphytopath.58.46]
  • Sawada, H., Takikawa, Y. and Makino, T. (2015). Update of scientific names of crown gall and hairy root bacteria isolated in Japan. Plant Protection 69(2): 106-112. [jppa.or.jp]
  • Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T. (2007). Agrobacteria ─(3) Viewpoints for considering their systematics─. Microbial Resources and Systematics (Microbiology and Culture Collections) 23(2): 95-99. [jsmrs.jp]
  • Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T. (2014). Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank. Microbial Resources and Systematics (Microbiology and Culture Collections) 30(1): 13-27. [jsmrs.jp]
  • Tan, B.S., Yabuki, J., Matsumoto, S., Kageyama, K. and Fukui, H. (2003). PCR primers for identification of opine types of Agrobacterium tumefaciens in Japan. Journal of General Plant Pathology 69(4): 258-266. [10.1007/s10327-003-0044-0]
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