Details of microorganism genetic resources

Details of MAFF 211950
MAFF No.211950
CategoryBacterium
Scientific nameRhizobium vitis (Ophel and Kerr 1990) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ti)
Taxonomic statusApproved strain
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Deposited asAgrobacterium vitis Ophel and Kerr 1990
IdentifierH. Sawada
SourceActinidia deliciosa (A.Chev.) C.F.Liang et A.R.Ferguson (Actinidia chinensis Planch. var. hispida C.F.Liang)
Site on the sourcecrown gall tissues of a root
LocationJAPAN (HIROSHIMA)
Isolation dateJul 1987
IsolatorH. Sawada
DepositorH. Sawada
DesignationK-Ag-1
MediumDextrose 1g, Peptone 5g, Yeast extract 2.5g, Agar 15g, Distilled water 1000ml pH 7.0±
Temperature28℃
Time4days
HazardPathogenic (plant)
Sequence16S atpD glnA recA
Reference
  • Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K. (2009). Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile. Plant Pathology Journal 8(1): 1-8. [10.3923/ppj.2009.1.8]
  • Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K. (2009). Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species. Microbiological Research 164(6): 604-612. [10.1016/j.micres.2007.08.003]
  • Kawaguchi, A., Sawada, H. and Ichinose, Y. (2008). Phylogenetic and serological analyses reveal genetic diversity of Agrobacterium vitis strains in Japan. Plant Pathology 57(4): 747-753. [10.1111/j.1365-3059.2008.01829.x]
  • Kuzmanovic, N., Biondi, E., Ivanovic, M., Prokic, A., Zlatkovic, N., Bertaccini, A. and Obradovic, A. (2016). Evaluation of different PCR primers for identification of tumorigenic bacteria associated with grapevine crown gall. Journal of Plant Pathology 98(2): 311-319. [springer.com]
  • Sawada, H. (1994). Studies on differentiation and taxonomy of the genus Agrobacterium. Bulletin of the Fruit Tree Research Station 5: 1-110. [agriknowledge.affrc.go.jp]
  • Sawada, H. (2006). Agrobacteria ─(1) Introduction of their profiles─. Microbial Resources and Systematics (Microbiology and Culture Collections) 22(2): 117-121. [jsmrs.jp]
  • Sawada, H. (2007). Agrobacteria ─(2) Present status of their systematics─. Microbial Resources and Systematics (Microbiology and Culture Collections) 23(1): 29-34. [jsmrs.jp]
  • Sawada, H. (2015). Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 81(4): 332-340. [10.3186/jjphytopath.81.332]
  • Sawada, H. and Ieki, H. (1992). Phenotypic characteristics of the genus Agrobacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 37-45. [10.3186/jjphytopath.58.37]
  • Sawada, H., Ieki, H. and Matsuda, I. (1995). PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains. Applied and Environmental Microbiology 61(2): 828-831. [aem.asm.org]
  • Sawada, H., Ieki, H., Kobayashi, S. and Oiyama, I. (1992). Grouping of tumorigenic Agrobacterium spp. based on Ti plasmid-related phenotypes. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(2): 244-252. [10.3186/jjphytopath.58.244]
  • Sawada, H., Imada, J. and Ieki, H. (1992). Evaluation of serodiagnosis for differentiating serogroups of Agrobacterium tumefaciens biovar 3. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 91-94. [10.3186/jjphytopath.58.91]
  • Sawada, H., Imada, J. and Ieki, H. (1992). Serogroups of Agrobacterium tumefaciens biovar 3 determined using somatic antigens. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 52-57. [10.3186/jjphytopath.58.52]
  • Sawada, H., Suzaki, K. and Kawaguchi, A. (2016). Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 82(2): 116-124. [10.3186/jjphytopath.82.116]
  • Sawada, H., Takikawa, Y. and Ieki, H. (1992). Fatty acid methyl ester profiles of the genus Agrobacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 46-51. [10.3186/jjphytopath.58.46]
  • Sawada, H., Takikawa, Y. and Makino, T. (2015). Update of scientific names of crown gall and hairy root bacteria isolated in Japan. Plant Protection 69(2): 106-112. [jppa.or.jp]
  • Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T. (2007). Agrobacteria ─(3) Viewpoints for considering their systematics─. Microbial Resources and Systematics (Microbiology and Culture Collections) 23(2): 95-99. [jsmrs.jp]
  • Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T. (2014). Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank. Microbial Resources and Systematics (Microbiology and Culture Collections) 30(1): 13-27. [jsmrs.jp]
  • Suzaki, K., Yoshida, K. and Sawada, H. (2004). Detection of tumorigenic Agrobacterium strains from infected apple saplings by colony PCR with improved PCR primers. Journal of General Plant Pathology 70(6): 342-347. [10.1007/s10327-004-0133-8]
  • Tanaka, K., Arafat, H.H., Urbanczyk, H., Yamamoto, S., Moriguchi, K., Sawada, H. and Suzuki, K. (2009). Ability of Agrobacterium tumefaciens and A. rhizogenes strains, inability of A. vitis and A. rubi strains to adapt to salt-insufficient environment, and taxonomic significance of a simple salt requirement test in the pathogenic Agrobacterium species. The Journal of General and Applied Microbiology 55(1): 35-41. [10.2323/jgam.55.35]
  • Tanaka, K., Urbanczyk, H., Matsui, H., Sawada, H. and Suzuki, K. (2006). Construction of physical map and mapping of chromosomal virulence genes of the biovar 3 Agrobacterium (Rhizobium vitis) strain K-Ag-1. Genes and Genetic Systems 81(6): 373-380. [10.1266/ggs.81.373]
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