Top > Databases > Microorganism Search System

Detailed information of microorganism genetic resources

MAFF No.663001
CategoryBacterium
Scientific nameRhizobium vitis (Ophel and Kerr 1990) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ti)
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Deposited asAgrobacterium tumefaciens (Smith and Townsend 1907) Conn 1942
IdentifierH. Sawada
Taxonomic statusApproved strain
SourceVitis
Site on the sourcetrunk, diseased
LocationJAPAN (NAGANO)
IsolatorH. Sawada
DepositorH. Sawada
DesignationGAg27
MediumPotato Peptone Glucose Agar, modified (Potato infusion from 100.0g, Dipotassium phosphate 5.0g, Glucose 5.0g, Peptone 5.0g, NaCl 0.5g, Ferrous sulfate trace, Agar 15.0g) pH 7.0-
Temperature25℃
PropertyPathogenicity (Grapes Crown gall)
Sequence16S atpD glnA recA
ReferenceSawada, H. and Ieki, H., Phenotypic characteristics of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 37-45, 1992 [DOI]
Sawada, H., Imada, J. and Ieki, H., Serogroups of Agrobacterium tumefaciens biovar 3 determined using somatic antigens, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 52-57, 1992 [DOI]
Sawada, H., Ieki, H., Kobayashi, S. and Oiyama, I., Grouping of tumorigenic Agrobacterium spp. based on Ti plasmid-related phenotypes, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(2), 244-252, 1992 [DOI]
Yokota, A., Sakane, T., Ophel, K. and Sawada, H., Further studies on the cellular fatty acid composition of Rhizobium and Agrobacterium species, Research Communication, Institute for Fermentation, Osaka, 16, 86-94, 1993
Sawada, H., Takikawa, Y. and Ieki, H., Fatty acid methyl ester profiles of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 46-51, 1992 [DOI]
Sawada, H., Imada, J. and Ieki, H., Evaluation of serodiagnosis for differentiating serogroups of Agrobacterium tumefaciens biovar 3, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 91-94, 1992 [DOI]
Hamana, K., Matsuzaki, S., Sakana, T. and Yokota, A., Three biovars of Agrobacterium show distinct polyamine distribution patterns, Microbios, 73, 257-260, 1993
Fukai, K., Ishigami, T. and Hara, Y., Antibacterial activity of tea polyphenols against phytopathogenic bacteria, Agricultural and Biological Chemistry, 55(7), 1895-1897, 1991 [DOI]
Hamana, K., Minamisawa, K. and Matsuzaki, S., Polyamines in Rhizobium, Bradyrhizobium, Azorhizobium and Agrobacterium, FEMS Microbiology Letters, 71, 71-76, 1990 [DOI]
Sawada, H., Ieki, H. and Takikawa, Y., Identification of grapevine crown gall bacteria isolated in Japan, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 56(2), 199-206, 1990 [DOI]
Sawada, H., Studies on differentiation and taxonomy of the genus Agrobacterium, Bulletin of the Fruit Tree Research Station, 5, 1-110, 1994 [URL]
Suzaki, K., Yoshida, K. and Sawada, H., Detection of tumorigenic Agrobacterium strains from infected apple saplings by colony PCR with improved PCR primers, Journal of General Plant Pathology, 70(6), 342-347, 2004 [DOI]
Kawaguchi, A., Sawada, H., Inoue, K. and Nasu, H., Multiplex PCR for the identification of Agrobacterium biovar 3 strains, Journal of General Plant Pathology, 71(1), 54-59, 2005 [DOI]
Sawada, H., Ieki, H. and Matsuda, I., PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains, Applied and Environmental Microbiology, 61(2), 828-831, 1995 [URL]
Ieki, H. and Sawada, H., Method of evaluation on the degree of resistance of grapevine and resistance of grapevine cultivars to crown gall disease caused by Agrobacterium tumefaciens biovar 3, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(2), 195-199, 1992 [DOI]
Tanaka, K., Urbanczyk, H., Matsui, H., Sawada, H. and Suzuki, K., Construction of physical map and mapping of chromosomal virulence genes of the biovar 3 Agrobacterium (Rhizobium vitis) strain K-Ag-1, Genes and Genetic Systems, 81(6), 373-380, 2006 [DOI]
Kawaguchi, A., Sawada, H. and Ichinose, Y., Phylogenetic and serological analyses reveal genetic diversity of Agrobacterium vitis strains in Japan, Plant Pathology, 57(4), 747-753, 2008 [DOI]
Tanaka, K., Arafat, H.H., Urbanczyk, H., Yamamoto, S., Moriguchi, K., Sawada, H. and Suzuki, K., Ability of Agrobacterium tumefaciens and A. rhizogenes strains, inability of A. vitis and A. rubi strains to adapt to salt-insufficient environment, and taxonomic significance of a simple salt requirement test in the pathogenic Agrobacterium species, Journal of General and Applied Microbiology, 55(1), 35-41, 2009 [DOI]
Sawada, H., Agrobacteria ─(1) Introduction of their profiles─, Microbial Resources and Systematics (Microbiology and Culture Collections), 22(2), 117-121, 2006 [URL]
Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile, Plant Pathology Journal, 8(1), 1-8, 2009 [DOI]
Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species, Microbiological Research, 164(6), 604-612, 2009 [DOI]
Sawada, H., Agrobacteria ─(2) Present status of their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(1), 29-34, 2007 [URL]
Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T., Agrobacteria ─(3) Viewpoints for considering their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(2), 95-99, 2007 [URL]
Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T., Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank, Microbial Resources and Systematics (Microbiology and Culture Collections), 30(1), 13-27, 2014 [URL]
Sawada, H., Takikawa, Y. and Makino, T., Update of scientific names of crown gall and hairy root bacteria isolated in Japan, Plant Protection, 69(2), 106-112, 2015 [URL]
Sawada, H., Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 81(4), 332-340, 2015 [DOI]
Sawada, H., Suzaki, K. and Kawaguchi, A., Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 82(2), 116-124, 2016 [DOI]
Ito, T. and Suzaki, K., Universal detection of phytoplasmas and Xylella spp. by TaqMan singleplex and multiplex real-time PCR with dual priming oligonucleotides, PLoS ONE, 12(9), e0185427, 2017 [DOI]
Kuzmanovic, N., Biondi, E., Ivanovic, M., Prokic, A., Zlatkovic, N., Bertaccini, A. and Obradovic, A., Evaluation of different PCR primers for identification of tumorigenic bacteria associated with grapevine crown gall, Journal of Plant Pathology, 98(2), 311-319, 2016 [DOI]
AvailabilityYes