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MAFF No.301724
CategoryBacterium
Scientific nameRhizobium radiobacter (Beijerinck and van Delden 1902) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ri)
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Subclassificationgenomovar G7
Deposited asAgrobacterium rhizogenes (Riker, Banfield, Wright, Keitt and Sagen 1930) Conn 1942
IdentifierT. Shiomi
Taxonomic statusApproved strain
SourceCucumis melo L.
LocationJAPAN (CHIBA)
DepositorT. Shiomi
Designation2-1
Also deposited inInstitute For Fermentation, Osaka IFO 14554
PropertyPathogenicity (Melon Hairy root)
Sequence16S atpD glnA recA
PhotoAggregates in culture
ReferenceSawada, H. and Oyaizu, H., Classification of soil bacteria by DNA-RNA analysis, Nogyo Gijutsu, 48(5), 205-209, 1993
Yoshimatsu, K. and Shimomura, K., Isoquinoline alkaloid production by transformed cultures of Papaver somniferum, Bulletin of National Institute of Health Scinece, 119, 52-56, 2001
Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile, Plant Pathology Journal, 8(1), 1-8, 2009 [DOI]
Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species, Microbiological Research, 164(6), 604-612, 2009 [DOI]
Chen, L.-H., Hata, T., Yamakawa, Y. and Suzuki, Y., The effects of preservation temperatures and periods on hairy roots inducing ability of Agrobacterium rhizogenes, Plant Tissue Culture Letters, 12(1), 94-96, 1995 [URL]
Chen, L.-H., Katagiri, Y., Yamakawa, Y. and Suzuki, Y., Restriction patterns of plasmids isolated from ten japanese wild strains of Agrobacterium rhizogenes, Bioscience Biotechnology Biochemistry, 59(3), 541-542, 1995 [DOI]
Lin, T.-C., Ando, M., Lin, F.-L. and Ishimaru, K., Polyacetylenes in hairy root cultures of Campanula lactiflora, Chinese Pharmaceutical Journal, 54(1), 53-56, 2002 [URL]
Moriguchi, K., Maeda, Y., Satou, M., Hardayani, N.S.N., Kataoka, M., Tanaka, N. and Yoshida, K., The complete nucleotide sequence of a plant root-inducing (Ri) plasmid indicates its chimeric structure and evolutionary relationship between tumor-inducing (Ti) and symbiotic (Sym) plasmids in rhizobiaceae, Journal of Molecular Biology, 307(3), 771-784, 2001 [DOI]
Sasaki, K., Ishise, T., Shimomura, K., Kobayashi, T., Matsubayashi, Y., Sakagami, Y., Umetsu, H. and Kamada, H., Effects of phytosulfokine-α on growth and tropane alkaloid production in transformed roots of Atropa belladonna, Plant Growth Regulation, 36(1), 87-90, 2002 [DOI]
Sawada, H. and Azegami, K., First report of root mat (hairy root) of tomato (Lycopersicon esculentum) caused by Rhizobium radiobacter harboring cucumopine Ri plasmid in Japan, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 80(2), 98-114, 2014 [DOI]
Sawada, H. and Ieki, H., Phenotypic characteristics of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 37-45, 1992 [DOI]
Sawada, H., Agrobacteria ─(1) Introduction of their profiles─, Microbial Resources and Systematics (Microbiology and Culture Collections), 22(2), 117-121, 2006 [URL]
Sawada, H., Agrobacteria ─(2) Present status of their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(1), 29-34, 2007 [URL]
Sawada, H., Ieki, H. and Matsuda, I., PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains, Applied and Environmental Microbiology, 61(2), 828-831, 1995 [URL]
Sawada, H., Imada, J. and Ieki, H., Serogroups of Agrobacterium tumefaciens biovar 3 determined using somatic antigens, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 52-57, 1992 [DOI]
Sawada, H., Oyaizu, H., Matsumoto, S. and Ieki, H., Differentiation of Agrobacterium taxa based on partial sequences of 16S rRNA, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(5), 761-765, 1992 [DOI]
Sawada, H., Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 81(4), 332-340, 2015 [DOI]
Sawada, H., Studies on differentiation and taxonomy of the genus Agrobacterium, Bulletin of the Fruit Tree Research Station, 5, 1-110, 1994 [URL]
Sawada, H., Suzaki, K. and Kawaguchi, A., Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 82(2), 116-124, 2016 [DOI]
Sawada, H., Takikawa, Y. and Ieki, H., Fatty acid methyl ester profiles of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 46-51, 1992 [DOI]
Sawada, H., Takikawa, Y. and Makino, T., Update of scientific names of crown gall and hairy root bacteria isolated in Japan, Plant Protection, 69(2), 106-112, 2015 [URL]
Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T., Agrobacteria ─(3) Viewpoints for considering their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(2), 95-99, 2007 [URL]
Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T., Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank, Microbial Resources and Systematics (Microbiology and Culture Collections), 30(1), 13-27, 2014 [URL]
Suzaki, K., Yoshida, K. and Sawada, H., Detection of tumorigenic Agrobacterium strains from infected apple saplings by colony PCR with improved PCR primers, Journal of General Plant Pathology, 70(6), 342-347, 2004 [DOI]
Tanaka, N., Matsumoto, T. and Machida, Y., Transfer and analysis of pRi1724 in Agrobacterium rhizogenes strain MAFF03-01724 by conjugation or electroporation, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 59(5), 594-600, 1993 [URL]
Tanaka, N., Matsumoto, T. and Oka, A., Molecular analysis of T-DNA region on the root inducing plasmid (Ri) in a mikimopine type Agrobacterium rhizogenes strain 1724, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 59(2), 155-162, 1993 [URL]
Tanaka, N., Takao, M., Matsumoto, T. and Machida, Y., Transformation of Agrobacterium rhizogenes strain MAFF03-01724 by electroporation, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 59(5), 587-593, 1993 [URL]
Tsuchiya, K., D'Ursel, C.C.M., Horita, M. and Nozu, Y., Relation of Japanese Xanthomonas campestris pv. {vesicatoria} with worldwide strains revealed with three specific monoclonal antibodies, Journal of General Plant Pathology, 69(5), 310-315, 2003 [DOI]
Yoshimatsu, K. and Shimomura, K., Transformation of opium poppy (Papaver somniferum L.) with Agrobacterium rhizogenes MAFF 03-01724, Plant Cell Reports, 11(3), 132-136, 1992 [DOI]
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