Details of microorganism genetic resources

Details of MAFF 301224
MAFF No.301224
CategoryBacterium
Scientific nameRhizobium radiobacter (Beijerinck and van Delden 1902) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ti)
Taxonomic statusApproved strain
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Subclassificationgenomovar G1
Deposited asAgrobacterium tumefaciens (Smith and Townsend 1907) Conn 1942
IdentifierK. Ota
SourceRosa sp.
LocationJAPAN (OSAKA)
DepositorK. Ota
DesignationAT 7
MediumPotato 300.0g for decoction, Sucrose 15.0g, Peptone 5.0g, Na2HPO4・12H2O 2.0g, Ca(NO3)2・4H2O 0.5g, Agar 15.0g, Distilled water 1000ml pH 6.8-
Sequence16S atpD glnA recA
Reference
  • Hamana, K., Matsuzaki, S., Sakana, T. and Yokota, A. (1993). Three biovars of Agrobacterium show distinct polyamine distribution patterns. Microbios 73: 257-260.
  • Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K. (2009). Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile. Plant Pathology Journal 8(1): 1-8. [10.3923/ppj.2009.1.8]
  • Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K. (2009). Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species. Microbiological Research 164(6): 604-612. [10.1016/j.micres.2007.08.003]
  • Chen, L.-H., Hata, T., Yamakawa, Y. and Suzuki, Y. (1995). The effects of preservation temperatures and periods on hairy roots inducing ability of Agrobacterium rhizogenes. Plant Tissue Culture Letters 12(1): 94-96. [10.5511/plantbiotechnology1984.12.94]
  • Hamana, K., Minamisawa, K. and Matsuzaki, S. (1990). Polyamines in Rhizobium, Bradyrhizobium, Azorhizobium and Agrobacterium. FEMS Microbiology Letters 71: 71-76. [10.1111/j.1574-6968.1990.tb03800.x]
  • Ohta, K. and Nishiyama, K. (1984). Studies on the crown gall diseases of flower crops: I. Occurrence of the disease and the characterization of the causal bacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 50(2): 197-204. [10.3186/jjphytopath.50.197]
  • Sawada, H. (1994). Studies on differentiation and taxonomy of the genus Agrobacterium. Bulletin of the Fruit Tree Research Station 5: 1-110. [agriknowledge.affrc.go.jp]
  • Sawada, H. (2006). Agrobacteria ─(1) Introduction of their profiles─. Microbial Resources and Systematics (Microbiology and Culture Collections) 22(2): 117-121. [jsmrs.jp]
  • Sawada, H. (2007). Agrobacteria ─(2) Present status of their systematics─. Microbial Resources and Systematics (Microbiology and Culture Collections) 23(1): 29-34. [jsmrs.jp]
  • Sawada, H. (2015). Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 81(4): 332-340. [10.3186/jjphytopath.81.332]
  • Sawada, H. and Ieki, H. (1992). Phenotypic characteristics of the genus Agrobacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 37-45. [10.3186/jjphytopath.58.37]
  • Sawada, H., Ieki, H. and Matsuda, I. (1995). PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains. Applied and Environmental Microbiology 61(2): 828-831. [aem.asm.org]
  • Sawada, H., Imada, J. and Ieki, H. (1992). Serogroups of Agrobacterium tumefaciens biovar 3 determined using somatic antigens. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 52-57. [10.3186/jjphytopath.58.52]
  • Sawada, H., Suzaki, K. and Kawaguchi, A. (2016). Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 82(2): 116-124. [10.3186/jjphytopath.82.116]
  • Sawada, H., Takikawa, Y. and Ieki, H. (1992). Fatty acid methyl ester profiles of the genus Agrobacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 46-51. [10.3186/jjphytopath.58.46]
  • Sawada, H., Takikawa, Y. and Makino, T. (2015). Update of scientific names of crown gall and hairy root bacteria isolated in Japan. Plant Protection 69(2): 106-112. [jppa.or.jp]
  • Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T. (2007). Agrobacteria ─(3) Viewpoints for considering their systematics─. Microbial Resources and Systematics (Microbiology and Culture Collections) 23(2): 95-99. [jsmrs.jp]
  • Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T. (2014). Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank. Microbial Resources and Systematics (Microbiology and Culture Collections) 30(1): 13-27. [jsmrs.jp]
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