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Detailed information of microorganism genetic resources

MAFF No.301222
CategoryBacterium
Scientific nameRhizobium radiobacter (Beijerinck and van Delden 1902) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ti)
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Subclassificationgenomovar G1
Deposited asAgrobacterium tumefaciens (Smith and Townsend 1907) Conn 1942
IdentifierK. Ota
Taxonomic statusApproved strain
SourceChrysanthemum frutescens L.
LocationJAPAN (SHIZUOKA)
DepositorK. Ota
DesignationAT 3
MediumPotato 300.0g for decoction, Sucrose 15.0g, Peptone 5.0g, Na2HPO4・12H2O 2.0g, Ca(NO3)2・4H2O 0.5g, Agar 15.0g, Distilled water 1000ml pH 6.8-
PropertyPathogenicity (Marguerite Crown gall)
Sequence16S atpD glnA recA
ReferenceHamana, K., Matsuzaki, S., Sakana, T. and Yokota, A., Three biovars of Agrobacterium show distinct polyamine distribution patterns, Microbios, 73, 257-260, 1993
Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species, Microbiological Research, 164(6), 604-612, 2009 [DOI]
Chen, L.-H., Hata, T., Yamakawa, Y. and Suzuki, Y., The effects of preservation temperatures and periods on hairy roots inducing ability of Agrobacterium rhizogenes, Plant Tissue Culture Letters, 12(1), 94-96, 1995 [URL]
Hamana, K., Minamisawa, K. and Matsuzaki, S., Polyamines in Rhizobium, Bradyrhizobium, Azorhizobium and Agrobacterium, FEMS Microbiology Letters, 71, 71-76, 1990 [DOI]
Kano, S., Kurita, T., Kanematsu, S. and Morinaga, T., Agrobacterium tumefaciens-mediated transformation of the violet root-rot fungus, Helicobasidium mompa, and the effect of activated carbon, Mycoscience, 52(1), 24-30, 2011 [DOI]
Nagai-Miyata, Y., Tsuyuki, K., Sugitani, T., Ebashi, T. and Nakajima, Y., Isolation and characterization of a trehalulose-producing strain of Agrobacterium, Bioscience Biotechnology Biochemistry, 57(12), 2049-2053, 1993 [DOI]
Ohta, K. and Nishiyama, K., Studies on the crown gall diseases of flower crops: I. Occurrence of the disease and the characterization of the causal bacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 50(2), 197-204, 1984 [DOI]
Sawada, H. and Ieki, H., Phenotypic characteristics of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 37-45, 1992 [DOI]
Sawada, H., Agrobacteria ─(1) Introduction of their profiles─, Microbial Resources and Systematics (Microbiology and Culture Collections), 22(2), 117-121, 2006 [URL]
Sawada, H., Agrobacteria ─(2) Present status of their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(1), 29-34, 2007 [URL]
Sawada, H., Ieki, H. and Matsuda, I., PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains, Applied and Environmental Microbiology, 61(2), 828-831, 1995 [URL]
Sawada, H., Imada, J. and Ieki, H., Serogroups of Agrobacterium tumefaciens biovar 3 determined using somatic antigens, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 52-57, 1992 [DOI]
Sawada, H., Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 81(4), 332-340, 2015 [DOI]
Sawada, H., Studies on differentiation and taxonomy of the genus Agrobacterium, Bulletin of the Fruit Tree Research Station, 5, 1-110, 1994 [URL]
Sawada, H., Suzaki, K. and Kawaguchi, A., Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 82(2), 116-124, 2016 [DOI]
Sawada, H., Takikawa, Y. and Makino, T., Update of scientific names of crown gall and hairy root bacteria isolated in Japan, Plant Protection, 69(2), 106-112, 2015 [URL]
Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T., Agrobacteria ─(3) Viewpoints for considering their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(2), 95-99, 2007 [URL]
Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T., Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank, Microbial Resources and Systematics (Microbiology and Culture Collections), 30(1), 13-27, 2014 [URL]
AvailabilityYes