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Detailed information of microorganism genetic resources

MAFF No.301001
CategoryBacterium
Scientific nameRhizobium radiobacter (Beijerinck and van Delden 1902) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ti)
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Subclassificationgenomovar G4
Deposited asAgrobacterium tumefaciens (Smith and Townsend 1907) Conn 1942
IdentifierH. Tabei
Taxonomic statusApproved strain
SourcePrunus
LocationJAPAN (SAITAMA)
Also deposited in NIAS A2-1-1
PropertyPathogenicity
Sequence16S atpD glnA recA
ReferenceChen, L.-H., Hata, T., Yamakawa, Y. and Suzuki, Y., The effects of preservation temperatures and periods on hairy roots inducing ability of Agrobacterium rhizogenes, Plant Tissue Culture Letters, 12(1), 94-96, 1995 [URL]
Sawada, H. and Ieki, H., Phenotypic characteristics of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 37-45, 1992 [DOI]
Sawada, H., Imada, J. and Ieki, H., Serogroups of Agrobacterium tumefaciens biovar 3 determined using somatic antigens, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 52-57, 1992 [DOI]
Sawada, H., Ieki, H., Kobayashi, S. and Oiyama, I., Grouping of tumorigenic Agrobacterium spp. based on Ti plasmid-related phenotypes, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(2), 244-252, 1992 [DOI]
Sawada, H., Takikawa, Y. and Ieki, H., Fatty acid methyl ester profiles of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 46-51, 1992 [DOI]
Hamana, K., Matsuzaki, S., Sakana, T. and Yokota, A., Three biovars of Agrobacterium show distinct polyamine distribution patterns, Microbios, 73, 257-260, 1993
Hamana, K., Minamisawa, K. and Matsuzaki, S., Polyamines in Rhizobium, Bradyrhizobium, Azorhizobium and Agrobacterium, FEMS Microbiology Letters, 71, 71-76, 1990 [DOI]
Sawada, H., Studies on differentiation and taxonomy of the genus Agrobacterium, Bulletin of the Fruit Tree Research Station, 5, 1-110, 1994 [URL]
Suzuki, K., Hattori, Y., Uraji, M., Ohta, N., Iwata, K., Murata, K., Kato, A. and Yoshida, K., Complete nucleotide sequence of a plant tumor-inducing Ti plasmid, Gene, 242(1-2), 331-336, 2000 [DOI]
Sawada, H., Ieki, H. and Matsuda, I., PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains, Applied and Environmental Microbiology, 61(2), 828-831, 1995 [URL]
Suzuki, K., Iwata, K. and Yoshida, K., Genome analysis of Agrobacterium tumefaciens: construction of physical maps for linear and circular chromosomal DNAs, determination of copy number ratio and mapping of chromosomal virulence genes, DNA Research, 8(4), 141-152, 2001 [DOI]
Sonoda, H., Suzuki, K. and Yoshida, K., Gene cluster for ferric iron uptake in Agrobacterium tumefaciens MAFF301001, Genes and Genetic Systems, 77(3), 137-146, 2002 [DOI]
Tanaka, K., Arafat, H.H., Urbanczyk, H., Yamamoto, S., Moriguchi, K., Sawada, H. and Suzuki, K., Ability of Agrobacterium tumefaciens and A. rhizogenes strains, inability of A. vitis and A. rubi strains to adapt to salt-insufficient environment, and taxonomic significance of a simple salt requirement test in the pathogenic Agrobacterium species, Journal of General and Applied Microbiology, 55(1), 35-41, 2009 [DOI]
Sawada, H., Agrobacteria ─(1) Introduction of their profiles─, Microbial Resources and Systematics (Microbiology and Culture Collections), 22(2), 117-121, 2006 [URL]
Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile, Plant Pathology Journal, 8(1), 1-8, 2009 [DOI]
Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species, Microbiological Research, 164(6), 604-612, 2009 [DOI]
Sawada, H., Agrobacteria ─(2) Present status of their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(1), 29-34, 2007 [URL]
Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T., Agrobacteria ─(3) Viewpoints for considering their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(2), 95-99, 2007 [URL]
Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T., Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank, Microbial Resources and Systematics (Microbiology and Culture Collections), 30(1), 13-27, 2014 [URL]
Sawada, H., Takikawa, Y. and Makino, T., Update of scientific names of crown gall and hairy root bacteria isolated in Japan, Plant Protection, 69(2), 106-112, 2015 [URL]
Sawada, H., Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 81(4), 332-340, 2015 [DOI]
Sawada, H., Suzaki, K. and Kawaguchi, A., Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 82(2), 116-124, 2016 [DOI]
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