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Detailed information of microorganism genetic resources

MAFF No.211942
CategoryBacterium
Scientific nameRhizobium vitis (Ophel and Kerr 1990) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ti)
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Deposited asAgrobacterium vitis Ophel and Kerr 1990
IdentifierH. Sawada
Taxonomic statusApproved strain
SourceVitis
Site on the sourcetrunk
LocationJAPAN (AOMORI)
Isolation dateJun 1988
IsolatorH. Sawada
DepositorH. Sawada
DesignationG-Ag-60
MediumDextrose 1g, Peptone 5g, Yeast extract 2.5g, Agar 15g, Distilled water 1000ml pH 7.0±
Temperature28℃
Time4days
HazardPathogenic (plant)
PropertyPathogenicity (Grapes Crown gall)
Sequence16S glnA recA
ReferenceArafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile, Plant Pathology Journal, 8(1), 1-8, 2009 [DOI]
Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K., Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species, Microbiological Research, 164(6), 604-612, 2009 [DOI]
Kawaguchi, A., Sawada, H. and Ichinose, Y., Phylogenetic and serological analyses reveal genetic diversity of Agrobacterium vitis strains in Japan, Plant Pathology, 57(4), 747-753, 2008 [DOI]
Kuzmanovic, N., Biondi, E., Ivanovic, M., Prokic, A., Zlatkovic, N., Bertaccini, A. and Obradovic, A., Evaluation of different PCR primers for identification of tumorigenic bacteria associated with grapevine crown gall, Journal of Plant Pathology, 98(2), 311-319, 2016 [DOI]
Sawada, H. and Ieki, H., Phenotypic characteristics of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 37-45, 1992 [DOI]
Sawada, H., Agrobacteria ─(1) Introduction of their profiles─, Microbial Resources and Systematics (Microbiology and Culture Collections), 22(2), 117-121, 2006 [URL]
Sawada, H., Agrobacteria ─(2) Present status of their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(1), 29-34, 2007 [URL]
Sawada, H., Imada, J. and Ieki, H., Evaluation of serodiagnosis for differentiating serogroups of Agrobacterium tumefaciens biovar 3, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 91-94, 1992 [DOI]
Sawada, H., Imada, J. and Ieki, H., Serogroups of Agrobacterium tumefaciens biovar 3 determined using somatic antigens, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 52-57, 1992 [DOI]
Sawada, H., Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 81(4), 332-340, 2015 [DOI]
Sawada, H., Studies on differentiation and taxonomy of the genus Agrobacterium, Bulletin of the Fruit Tree Research Station, 5, 1-110, 1994 [URL]
Sawada, H., Suzaki, K. and Kawaguchi, A., Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 82(2), 116-124, 2016 [DOI]
Sawada, H., Takikawa, Y. and Ieki, H., Fatty acid methyl ester profiles of the genus Agrobacterium, Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan), 58(1), 46-51, 1992 [DOI]
Sawada, H., Takikawa, Y. and Makino, T., Update of scientific names of crown gall and hairy root bacteria isolated in Japan, Plant Protection, 69(2), 106-112, 2015 [URL]
Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T., Agrobacteria ─(3) Viewpoints for considering their systematics─, Microbial Resources and Systematics (Microbiology and Culture Collections), 23(2), 95-99, 2007 [URL]
Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T., Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank, Microbial Resources and Systematics (Microbiology and Culture Collections), 30(1), 13-27, 2014 [URL]
Tanaka, K., Arafat, H.H., Urbanczyk, H., Yamamoto, S., Moriguchi, K., Sawada, H. and Suzuki, K., Ability of Agrobacterium tumefaciens and A. rhizogenes strains, inability of A. vitis and A. rubi strains to adapt to salt-insufficient environment, and taxonomic significance of a simple salt requirement test in the pathogenic Agrobacterium species, Journal of General and Applied Microbiology, 55(1), 35-41, 2009 [DOI]
Tanaka, K., Urbanczyk, H., Matsui, H., Sawada, H. and Suzuki, K., Construction of physical map and mapping of chromosomal virulence genes of the biovar 3 Agrobacterium (Rhizobium vitis) strain K-Ag-1, Genes and Genetic Systems, 81(6), 373-380, 2006 [DOI]
AvailabilityYes