Details of microorganism genetic resources

Details of MAFF 211729
MAFF No.211729
CategoryBacterium
Scientific nameRhizobium rhizogenes (Riker, Banfield, Wright, Keitt and Sagen 1930) Young, Kuykendall, Martinez-Romero, Kerr and Sawada 2001 (Ti)
Taxonomic statusApproved strain
Validation✔The current name marked was taxonomically verified by NARO Genebank.
Reidentified byH. Sawada (Updated: Oct 2013)
Deposited asAgrobacterium rhizogenes (Riker, Banfield, Wright, Keitt and Sagen 1930) Conn 1942
IdentifierH. Sawada
SourcePrunus salicina Lindl.
Site on the sourcecrown gall tissues
LocationJAPAN (OKAYAMA)
Isolation dateApr 1988
IsolatorH. Sawada
DepositorH. Sawada
DesignationPl-Ag-1
MediumDextrose 1g, Peptone 5g, Yeast extract 2.5g, Agar 15g, Distilled water 1000ml pH 7.0±
Temperature28℃
Time4days
HazardPathogenic (plant)
Sequence16S atpD glnA recA
Reference
  • Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K. (2009). Variation of lipopolysaccharide among the three major Agrobacterium species and the effect of environmental stress on the lipopolysaccharide profile. Plant Pathology Journal 8(1): 1-8. [10.3923/ppj.2009.1.8]
  • Bautista-Zapanta, J., Arafat, H.H., Tanaka, K., Sawada, H. and Suzuki, K. (2009). Variation of 16S-23S internally transcribed spacer sequence and intervening sequence in rDNA among the three major Agrobacterium species. Microbiological Research 164(6): 604-612. [10.1016/j.micres.2007.08.003]
  • Kawaguchi, A., Sawada, H., Inoue, K. and Nasu, H. (2005). Multiplex PCR for the identification of Agrobacterium biovar 3 strains. Journal of General Plant Pathology 71(1): 54-59. [10.1007/s10327-004-0160-5]
  • Kuzmanovic, N., Biondi, E., Ivanovic, M., Prokic, A., Zlatkovic, N., Bertaccini, A. and Obradovic, A. (2016). Evaluation of different PCR primers for identification of tumorigenic bacteria associated with grapevine crown gall. Journal of Plant Pathology 98(2): 311-319. [10.4454/JPP.V98I2.028]
  • Sawada, H. (1994). Studies on differentiation and taxonomy of the genus Agrobacterium. Bulletin of the Fruit Tree Research Station 5: 1-110. [agriknowledge.affrc.go.jp]
  • Sawada, H. (2006). Agrobacteria ─(1) Introduction of their profiles─. Microbial Resources and Systematics (Microbiology and Culture Collections) 22(2): 117-121. [jsmrs.jp]
  • Sawada, H. (2007). Agrobacteria ─(2) Present status of their systematics─. Microbial Resources and Systematics (Microbiology and Culture Collections) 23(1): 29-34. [jsmrs.jp]
  • Sawada, H. (2015). Simultaneous identification of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 81(4): 332-340. [10.3186/jjphytopath.81.332]
  • Sawada, H. and Ieki, H. (1992). Phenotypic characteristics of the genus Agrobacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 37-45. [10.3186/jjphytopath.58.37]
  • Sawada, H., Ieki, H. and Matsuda, I. (1995). PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains. Applied and Environmental Microbiology 61(2): 828-831. [aem.asm.org]
  • Sawada, H., Suzaki, K. and Kawaguchi, A. (2016). Simultaneous plasmid profiling of phytopathogenic Rhizobium species (former Agrobacterium species) using multiplex colony-direct PCR. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 82(2): 116-124. [10.3186/jjphytopath.82.116]
  • Sawada, H., Takikawa, Y. and Ieki, H. (1992). Fatty acid methyl ester profiles of the genus Agrobacterium. Japanese Journal of Phytopathology (Annals of the Phytopathological Society of Japan) 58(1): 46-51. [10.3186/jjphytopath.58.46]
  • Sawada, H., Takikawa, Y. and Makino, T. (2015). Update of scientific names of crown gall and hairy root bacteria isolated in Japan. Plant Protection 69(2): 106-112. [jppa.or.jp]
  • Sawada, H., Tomioka, K., Nagai, T., Aoki, T., Endo, M., Hirooka, Y. and Sato, T. (2007). Agrobacteria ─(3) Viewpoints for considering their systematics─. Microbial Resources and Systematics (Microbiology and Culture Collections) 23(2): 95-99. [jsmrs.jp]
  • Sawada, H., Yamasaki, F., Takeya, M. and Aoki, T. (2014). Changing situation relevant to the taxonomy of phytopathogenic Rhizobium species and their re-identification in NIAS Genebank. Microbial Resources and Systematics (Microbiology and Culture Collections) 30(1): 13-27. [jsmrs.jp]
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